PEARG Documentation

This site contains bioinformatics-related documentation for PEARG lab members.

Getting started

These documents go over what compute resources are available to you, how to get an account on our clusters, and some terms of conditions.

• HPC resources overview
• Getting an account

Best practices

These documents describe some best practices when using our compute resources. Not following some of these guidelines may result in a scolding.

• Directory structure
• Naming files
• Backing up your data

Metadata Documentation

These documents describe how to use our metadata system to record information relating to your samples.

• Metadata overview
• Using Mediaflux

Usage Documentation

Documentation related to using our clusters.

• Running jobs with SLURM
• Using VNC
• Installing software
• Stacks databases

Tutorials

Tutorials to help you get started in bioinformatics.

• Introduction to RAD-seq using Stacks

Contribute to this documentation

This documentation’s source code is hosted on GitHub. Feel free to update the content— just click the Edit this page link displayed on top right of each page, and create a pull request when done.

Contact

Contact me at jchung@unimelb.edu.au or submit an issue on GitHub.